Following Departments offer MS/ Ph.D Program.
Criteria for admission in MS / Ph.D & procedure for evaluation is as described by Higher Education Commission.
| Computer Science and Information Technology | BS(CS), BS(IT), BS(SE) | MCS, MIT | MS |
| Business Administration | BBA | MBA | MS, Ph.D |
| Pharmacy | Pharm D | MS, Ph.D | |
| Economics | BS | M.A | MS, Ph.D |
| Education | BS | M.A | MS, Ph.D |
| Englsih | BS | M.A | MS, Ph.D |
| Islamic Learning | BS | M.A | MS, Ph.D |
| Political Science | BS | M.A | MS |
| Urdu | BS | M.A | MS, Ph.D |
| Media Studies | BS | M.A | MS, Ph.D |
| Biochemistry | BS | M.Sc | MS, Ph.D |
| Botany | BS | M.Sc | MS, Ph.D |
| Chemistry | BS | M.Sc | MS, Ph.D |
| Mathematics | BS | M.Sc | MS |
| Microbiology | BS | M.Sc | MS, Ph.D |
| Zoology | BS | M.Sc | MS, Ph.D |
| Education (Teachers training) | B.Ed, BS | M.Ed | MS, Ph.D |